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Class BackboneRepresentation

Backbone representation. Show cylinders (or lines) connecting .CA (protein) or .C4'/.C3' (RNA/DNA) of polymers.

Name: backbone

example

stage.loadFile( "rcsb://1sfi" ).then( function( o ){ o.addRepresentation( "backbone" ); o.autoView(); } );

Hierarchy

Indexable

[key: string]: any

Backbone representation. Show cylinders (or lines) connecting .CA (protein) or .C4'/.C3' (RNA/DNA) of polymers.

Name: backbone

example

stage.loadFile( "rcsb://1sfi" ).then( function( o ){ o.addRepresentation( "backbone" ); o.autoView(); } );

Index

Constructors

Properties

Accessors

Methods

Constructors

constructor

Properties

Protected aspectRatio

aspectRatio: number

Protected assembly

assembly: string

Protected bondScale

bondScale: number

Protected bondSpacing

bondSpacing: number

bufferList

bufferList: Buffer[]

Protected clipCenter

clipCenter: Vector3

Protected clipNear

clipNear: number

Protected clipRadius

clipRadius: number

Protected colorDomain

colorDomain: number[]

Protected colorMode

colorMode: ColorMode

Protected colorReverse

colorReverse: boolean

Protected colorScale

colorScale: string | string[]

Protected colorScheme

colorScheme: string

Protected colorValue

colorValue: number

Protected cylinderOnly

cylinderOnly: boolean

Protected dataList

dataList: StructureRepresentationData[]

Protected defaultAssembly

defaultAssembly: string

Protected depthWrite

depthWrite: boolean

Protected diffuse

diffuse: number

Protected Optional diffuseInterior

diffuseInterior: undefined | false | true

Protected disableImpostor

disableImpostor: boolean

Protected disablePicking

disablePicking: boolean

Protected disposed

disposed: boolean

Protected flatShaded

flatShaded: boolean

Protected interiorColor

interiorColor: number

Protected interiorDarkening

interiorDarkening: number

lazy

lazy: boolean

lazyProps

lazyProps: { bufferParams: BufferParameters | {}; build: boolean; what: {} }

Type declaration

Protected lineBuffer

lineBuffer: WideLineBuffer

Protected lineOnly

lineOnly: boolean

Protected lineWidth

lineWidth: number

Protected linewidth

linewidth: number

Protected manualAttach

manualAttach: () => any

Type declaration

    • (): any

    • Returns any

Protected matrix

matrix: Matrix4

Protected metalness

metalness: number

Protected multipleBond

multipleBond: "off" | "symmetric" | "offset"

Protected name

name: string

Protected needsBuild

needsBuild: boolean

Protected opacity

opacity: number

Protected openEnded

openEnded: boolean

parameters

parameters: any

Protected radialSegments

radialSegments: number

Protected radiusData

radiusData: {}

Type declaration

  • [k: number]: number

Protected radiusScale

radiusScale: number

Protected radiusSize

radiusSize: number

Protected radiusType

radiusType: RadiusType

Protected roughness

roughness: number

Protected selection

selection: Selection

Protected side

side: BufferSide

Protected sphereDetail

sphereDetail: number

structure

structure: Structure

structureView

structureView: StructureView

tasks

tasks: Counter

Protected toBePrepared

toBePrepared: boolean

type

type: string

Protected Optional useInteriorColor

useInteriorColor: undefined | false | true

viewer

viewer: Viewer

visible

visible: boolean

Protected wireframe

wireframe: boolean

Accessors

defaultScale

  • get defaultScale(): { bfactor: number; covalent: number; sstruc: number; vdw: number }

Methods

attach

  • attach(callback: () => void): void

build

  • build(updateWhat?: undefined | {}): void

clear

  • clear(): void

create

  • create(): void

createData

dispose

  • dispose(): void

getAssembly

getAtomData

getAtomParams

getAtomRadius

getBondData

getBondParams

getBufferParams

  • getBufferParams(p?: {}): { clipCenter: Vector3; clipNear: number; clipRadius: number; depthWrite: boolean; diffuse: number; diffuseInterior: undefined | false | true; disablePicking: boolean; flatShaded: boolean; interiorColor: number; interiorDarkening: number; matrix: Matrix4; metalness: number; opacity: number; roughness: number; side: "double" | "front" | "back"; useInteriorColor: undefined | false | true; wireframe: boolean } & {}

  • Parameters

    • Default value p: {} = {}
      • [k: string]: any

    Returns { clipCenter: Vector3; clipNear: number; clipRadius: number; depthWrite: boolean; diffuse: number; diffuseInterior: undefined | false | true; disablePicking: boolean; flatShaded: boolean; interiorColor: number; interiorDarkening: number; matrix: Matrix4; metalness: number; opacity: number; roughness: number; side: "double" | "front" | "back"; useInteriorColor: undefined | false | true; wireframe: boolean } & {}

getColorParams

getParameters

  • getParameters(): {} & { defaultAssembly: string; sele: undefined | string }

getQuality

  • getQuality(): "high" | "medium" | "low"

getRadiusParams

  • getRadiusParams(param?: any): { data: {}; scale: number; size: number; type: "" | "data" | "sstruc" | "bfactor" | "size" | "explicit" | "vdw" | "covalent" }

  • Parameters

    • Optional param: any

    Returns { data: {}; scale: number; size: number; type: "" | "data" | "sstruc" | "bfactor" | "size" | "explicit" | "vdw" | "covalent" }

    • data: {}
      • [k: number]: number
    • scale: number
    • size: number
    • type: "" | "data" | "sstruc" | "bfactor" | "size" | "explicit" | "vdw" | "covalent"

init

make

  • make(updateWhat?: undefined | false | true, callback?: undefined | (() => void)): void

prepare

  • prepare(cb: () => void): void

setColor

setParameters

setRadius

setSelection

  • setSelection(string: string, silent?: undefined | false | true): this

setVisibility

  • setVisibility(value: boolean, noRenderRequest?: undefined | false | true): Representation

update

updateData

updateParameters

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