Class AtomStore

Atom store

Hierarchy

Store
- AtomStore

Indexable

[k: string]: any

Atom store

Index

Constructors

constructor

Properties

Accessors

_defaultFields

Methods

Constructors

constructor

new AtomStore(size?: number): AtomStore

Inherited from Store.constructor
- Defined in src/store/store.ts:23
Parameters
- Default value size: number = 0
Returns AtomStore

Properties

_fields

_fields: StoreField[]

altloc

altloc: Uint8Array

atomTypeId

atomTypeId: Uint16Array

bfactor

bfactor: Float32Array

count

count: number

Optional formalCharge

formalCharge: Uint8Array

length

length: number

occupancy

occupancy: Float32Array

Optional partialCharge

partialCharge: Float32Array

residueIndex

residueIndex: Uint32Array

serial

serial: Int32Array

x

x: Float32Array

y

y: Float32Array

z

z: Float32Array

Accessors

_defaultFields

get _defaultFields(): [string, number, "int8" | "int16" | "int32" | "uint8" | "uint16" | "uint32" | "float32"][]

Overrides Store._defaultFields
- Defined in src/store/atom-store.ts:27
Returns [string, number, "int8" | "int16" | "int32" | "uint8" | "uint16" | "uint32" | "float32"][]

Methods

_init

_init(size: number): void

Inherited from Store._init
- Defined in src/store/store.ts:38
Initialize the store

Parameters
- size: number
  
  size to initialize
Returns void

_initField

_initField(name: string, size: number, type: TypedArrayString): void

Inherited from Store._initField
- Defined in src/store/store.ts:56
Initialize a field

Parameters
- name: string
  
  field name
- size: number
  
  element size
- type: TypedArrayString
  
  data type, one of int8, int16, int32, uint8, uint16, uint32, float32
Returns void

addField

addField(name: string, size: number, type: TypedArrayString): void

Inherited from Store.addField
- Defined in src/store/store.ts:68
Add a field

Parameters
- name: string
  
  field name
- size: number
  
  element size
- type: TypedArrayString
  
  data type, one of int8, int16, int32, uint8, uint16, uint32, float32
Returns void

clear

clear(): void

Inherited from Store.clear
- Defined in src/store/store.ts:215
Empty the store

Returns void

copyFrom

copyFrom(other: Store, thisOffset: number, otherOffset: number, length: number): void

Inherited from Store.copyFrom
- Defined in src/store/store.ts:120
Copy data from one store to another

Parameters
- other: Store
  
  store to copy from
- thisOffset: number
  
  offset to start copying to
- otherOffset: number
  
  offset to start copying from
- length: number
  
  number of entries to copy
Returns void

copyWithin

copyWithin(offsetTarget: number, offsetSource: number, length: number): void

Inherited from Store.copyWithin
- Defined in src/store/store.ts:144
Copy data within this store

Parameters
- offsetTarget: number
- offsetSource: number
- length: number
  
  number of entries to copy
Returns void

dispose

dispose(): void

Inherited from Store.dispose
- Defined in src/store/store.ts:223
Dispose of the store entries and fields

Returns void

getAltloc

getAltloc(i: number): string

- Defined in src/store/atom-store.ts:46
Parameters
- i: number
Returns string

growIfFull

growIfFull(): void

Inherited from Store.growIfFull
- Defined in src/store/store.ts:105
Resize the store to 1.5 times its current size if full

Returns void

resize

resize(size?: undefined | number): void

Inherited from Store.resize
- Defined in src/store/store.ts:78
Resize the store to the new size

Parameters
- Optional size: undefined | number
  
  new size
Returns void

setAltloc

setAltloc(i: number, str: string): void

- Defined in src/store/atom-store.ts:42
Parameters
- i: number
- str: string
Returns void

sort

sort(compareFunction: (a: any, b: any) => number): void

Inherited from Store.sort
- Defined in src/store/store.ts:165
Sort entries in the store given the compare function

Parameters
- compareFunction: (a: any, b: any) => number
  
  function to sort by
  - - (a: any, b: any): number
    - Parameters
      - a: any
      - b: any
      Returns number
Returns void

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