Class Polymer

Polymer

Hierarchy

Polymer

Index

Constructors

constructor

Properties

Accessors

Methods

Constructors

constructor

new Polymer(structure: Structure, residueIndexStart: number, residueIndexEnd: number): Polymer

- Defined in src/proxy/polymer.ts:34
Parameters
- structure: Structure
  
  the structure
- residueIndexStart: number
  
  the index of the first residue
- residueIndexEnd: number
  
  the index of the last residue
Returns Polymer

Properties

Private __residueProxy

__residueProxy: ResidueProxy

atomStore

atomStore: AtomStore

chainStore

chainStore: ChainStore

isCyclic

isCyclic: boolean

isNextConnected

isNextConnected: boolean

isNextNextConnected

isNextNextConnected: boolean

isPrevConnected

isPrevConnected: boolean

residueCount

residueCount: number

residueIndexEnd

residueIndexEnd: number

the index of the last residue

residueIndexStart

residueIndexStart: number

the index of the first residue

residueStore

residueStore: ResidueStore

structure

structure: Structure

the structure

Accessors

chainIndex

get chainIndex(): number

- Defined in src/proxy/polymer.ts:64
Returns number

chainname

get chainname(): string

- Defined in src/proxy/polymer.ts:74
type

{String}

Returns string

modelIndex

get modelIndex(): number

- Defined in src/proxy/polymer.ts:67
Returns number

Methods

eachAtom

eachAtom(callback: function, selection?: Selection): void

- Defined in src/proxy/polymer.ts:168
Atom iterator

Parameters
- callback: function
  
  the callback
  - - (ap: AtomProxy): void
    - Parameters
      - ap: AtomProxy
      Returns void
- Optional selection: Selection
Returns void

eachAtomN

eachAtomN(n: number, callback: function, type: string): void

- Defined in src/proxy/polymer.ts:174
Parameters
- n: number
- callback: function
  - - (...apArray: AtomProxy[]): void
    - Parameters
      - Rest ...apArray: AtomProxy[]
      Returns void
- type: string
Returns void

eachResidue

eachResidue(callback: function): void

- Defined in src/proxy/polymer.ts:197
Residue iterator

Parameters
- callback: function
  
  the callback
  - - (rp: ResidueProxy): void
    - Parameters
      - rp: ResidueProxy
      Returns void
Returns void

getAtomIndexByType

getAtomIndexByType(index: number, type: string): undefined | number

- Defined in src/proxy/polymer.ts:117
Parameters
- index: number
- type: string
Returns undefined | number

getBackboneType

getBackboneType(position: number): number

- Defined in src/proxy/polymer.ts:112
Parameters
- position: number
Returns number

getMoleculeType

getMoleculeType(): number

- Defined in src/proxy/polymer.ts:107
Returns number

isCg

isCg(): boolean

- Defined in src/proxy/polymer.ts:93
If atom is part of a coarse-grain group

Returns boolean

flag

isNucleic

isNucleic(): boolean

- Defined in src/proxy/polymer.ts:102
If atom is part of a nucleic molecule

Returns boolean

flag

isProtein

isProtein(): boolean

- Defined in src/proxy/polymer.ts:84
If first residue is from aprotein

Returns boolean

flag

qualifiedName

qualifiedName(): string

- Defined in src/proxy/polymer.ts:208
Returns string

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