import StructureView from 'ngl/src/structure/structure-view.js'

public class | source

StructureView

Extends:

Structure → StructureView

View on the structure, restricted to the selection

Constructor Summary

Public Constructor
public	constructor(structure: Structure, selection: Selection)

Member Summary

Public Members
public	atomCount
public get	atomMap
public	atomSet
public	atomSetCache
public get	atomSetDict
public get	atomStore
public get	backboneBondStore
public get	biomolDict
public	bondCount
public get	bondHash
public	bondSet
public get	bondStore
public	boundingBox
public get	boxes
public	center
public get	chainStore
public get	entityList
public get	frames
public get	id
public get	modelStore
public get	name
public get	path
public get	residueMap
public get	residueStore
public get	rungBondStore
public	selection
public get	spatialHash
public	structure
public get	title
public get	type
public get	unitcell
public get	validation

Private Members
private	_ap
private	_bp
private	_cp
private	_rp

Method Summary

Public Methods
public	dispose()
public	eachAtom()
public	eachBond()
public	eachChain()
public	eachModel()
public	eachResidue()
public	eachResidueN(): undefined Not implemented
public	getAtomIndices()
public	getAtomSet()
public	getSelection()
public	getStructure()
public	init()
public	refresh(): undefined Updates atomSet, bondSet, atomSetCache, atomCount, bondCount, boundingBox, center.
public	refreshPosition()
public	setSelection()

Inherited Summary

From class Structure
public get	type
public	atomCount
public	atomMap: AtomMap
public	atomSet
public	atomSetCache
public	atomSetDict
public	atomStore
public	backboneBondStore
public	biomolDict
public	bondCount
public	bondHash: BondHash
public	bondSet
public	bondStore
public	boundingBox: Box3
public	boxes
public	center: Vector3
public	chainStore
public	entityList: Entity[]
public	extraData: StructureExtraData
public	frames
public	header: StructureHeader
public	id
public	modelStore
public	name
public	path
public	residueMap: ResidueMap
public	residueStore
public	rungBondStore
public	signals: {refreshed: Signal}
public	spatialHash: SpatialHash
public	title
public	unitcell: Unitcell
public	validation: Validation
private	_ap
private	_bp
private	_cp
private	_rp
public	atomCenter(selection: Selection): Vector3 Gets the center of the (selected) structure atoms
public	dispose(): undefined Calls dispose() method of property objects.
public	eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined Atom iterator
public	eachBond(callback: function(bond: BondProxy), selection: Selection): undefined Bond iterator
public	eachChain(callback: function(chain: ChainProxy), selection: Selection): undefined Chain iterator
public	eachEntity(callback: function(entity: Entity), type: EntityType): undefined Entity iterator
public	eachModel(callback: function(model: ModelProxy), selection: Selection): undefined Model iterator
public	eachPolymer(callback: function(polymer: Polymer), selection: Selection): undefined Polymer iterator
public	eachResidue(callback: function(residue: ResidueProxy), selection: Selection): undefined Residue iterator
public	eachResidueN(n: Integer, callback: function(residueList: ResidueProxy[])): undefined Multi-residue iterator
public	finalizeAtoms()
public	finalizeBonds()
public	getAtomData()
public	getAtomIndices()
public	getAtomProxy()
public	getAtomSet(selection: Boolean \| Selection \| BitArray): BitArray Get a set of atoms
public	getAtomSetWithinGroup(selection: Selection): BitArray Get set of all atoms within the groups of a selection
public	getAtomSetWithinPoint(point: Vector3 \| AtomProxy, radius: Number): BitArray Get set of atoms around a point
public	getAtomSetWithinSelection(selection: Selection, radius: Number): BitArray Get set of atoms around a set of atoms from a selection
public	getAtomSetWithinVolume(volume: Volume, radius: Number, minValue: [type], maxValue: [type], outside: [type]): BitArray Get set of atoms within a volume
public	getBackboneAtomData()
public	getBackboneBondData()
public	getBackboneBondSet()
public	getBondData()
public	getBondProxy()
public	getBondSet()
public	getBoundingBox(selection: Selection, box: Box3): Vector3 Gets the bounding box of the (selected) structure atoms
public	getChainProxy()
public	getChainnameCount(selection: Selection): Integer Get number of unique chainnames
public	getModelProxy()
public	getPrincipalAxes(selection: Selection): PrincipalAxes Gets the principal axes of the (selected) structure atoms
public	getResidueProxy()
public	getRungAtomData()
public	getRungBondData()
public	getRungBondSet()
public	getSelection()
public	getSequence()
public	getStructure()
public	hasCoords()
public	init()
public	refreshPosition()
public	updatePosition()