NGL Viewer

NGL Viewer is a collection of tools for web-based molecular graphics. WebGL is employed to display molecules like proteins and DNA/RNA with a variety of representations.

NGL

NGL is a viewer and a library for molecular visualization.

• Github
• Docs
• Web application
• Gallery

NGLview

Jupyter/IPython widget to interactively view molecular structures and trajectories in notebooks.

• Github
• Docs

MDsrv

MDsrv is a web-based tool developed to enhance collaborative research by providing non-experts with easy and quick online access to molecular dynamics (MD) simulations.

• Github
• Docs

Contact

Please send correspondence to Alexander Rose

Cite

• AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose. NGL viewer: web-based molecular graphics for large complexes. Bioinformatics: bty419, 2018. doi:10.1093/bioinformatics/bty419
• AS Rose and PW Hildebrand. NGL Viewer: a web application for molecular visualization. Nucl Acids Res (1 July 2015) 43 (W1): W576-W579 first published online April 29, 2015. doi:10.1093/nar/gkv402
• H Nguyen, DA Case and AS Rose. (2017). NGLview - Interactive molecular graphics for Jupyter notebooks. Bioinformatics, btx789. doi:10.1093/bioinformatics/btx789
• JKS Tiemann, R Guixà-González, PW Hildebrand and AS Rose. (2017) .Viewing and sharing molecular dynamics simulations on the web. Nature Methods 14, 1123–1124 (2017). doi:10.1038/nmeth.4497

Funding

• RCSB PDB funding by a grant [DBI-1338415; PI: SK Burley] from the NSF, the NIH, and the US DoE.
• NCI/NIH award number U01 CA198942
• DFG Projekt HI 1502