Index

A

add() (nglview.shape.Shape method) add_component() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) add_pdbid() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) add_representation() (nglview.NGLWidget method), [1] (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method)

add_structure() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) add_trajectory() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) ASEStructure (class in nglview) (class in nglview.adaptor)

B

background (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute)

C

camera (nglview.NGLWidget attribute), [1] (nglview.player.TrajectoryPlayer attribute) (nglview.widget.NGLWidget attribute) center() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) center_view() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) clear() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method)

clear_representations() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) color_by() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) ComponentViewer (class in nglview.widget) coordinates_dict (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) count (nglview.NGLWidget attribute), [1] (nglview.player.TrajectoryPlayer attribute) (nglview.widget.NGLWidget attribute)

D

delay (nglview.player.TrajectoryPlayer attribute) demo() (in module nglview) detach() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method)

disable_extension() (in module nglview.scripts.nglview) display() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) download_image() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method)

F

FileStructure (class in nglview) (class in nglview.adaptor)

frame (nglview.NGLWidget attribute), [1] (nglview.player.TrajectoryPlayer attribute) (nglview.widget.NGLWidget attribute)

G

get_coordinates() (nglview.adaptor.HTMDTrajectory method) (nglview.HTMDTrajectory method) (nglview.MDAnalysisTrajectory method) (nglview.MDTrajTrajectory method) (nglview.ParmEdTrajectory method) (nglview.PyTrajTrajectory method) (nglview.SimpletrajTrajectory method) (nglview.adaptor.MDAnalysisTrajectory method) (nglview.adaptor.MDTrajTrajectory method) (nglview.adaptor.ParmEdTrajectory method) (nglview.adaptor.PyTrajTrajectory method) (nglview.adaptor.SimpletrajTrajectory method) get_port() (nglview.scripts.app.NGLViewApp method) get_remote_port() (in module nglview.scripts.nglview) get_structure_string() (nglview.adaptor.ASEStructure method) (nglview.ASEStructure method) (nglview.FileStructure method) (nglview.HTMDTrajectory method) (nglview.MDAnalysisTrajectory method) (nglview.MDTrajTrajectory method) (nglview.ParmEdTrajectory method) (nglview.PdbIdStructure method) (nglview.PyTrajTrajectory method) (nglview.RdkitStructure method) (nglview.SimpletrajTrajectory method) (nglview.TextStructure method) (nglview.adaptor.FileStructure method) (nglview.adaptor.HTMDTrajectory method) (nglview.adaptor.MDAnalysisTrajectory method) (nglview.adaptor.MDTrajTrajectory method) (nglview.adaptor.ParmEdTrajectory method) (nglview.adaptor.PdbIdStructure method) (nglview.adaptor.PyTrajTrajectory method) (nglview.adaptor.RdkitStructure method) (nglview.adaptor.SimpletrajTrajectory method) (nglview.adaptor.TextStructure method)

H

hide() (nglview.NGLWidget method), [1] (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method)

HTMDTrajectory (class in nglview) (class in nglview.adaptor)

I

id (nglview.widget.ComponentViewer attribute) install_nbextension() (in module nglview.scripts.nglview)

interpolate (nglview.player.TrajectoryPlayer attribute) iparams (nglview.player.TrajectoryPlayer attribute)

L

loaded (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute)

M

main() (in module nglview.scripts.nglview) make_form_item_layout() (in module nglview.layout) MDAnalysisTrajectory (class in nglview) (class in nglview.adaptor)

MDTrajTrajectory (class in nglview) (class in nglview.adaptor)

N

n_components (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) n_frames (nglview.adaptor.HTMDTrajectory attribute) (nglview.HTMDTrajectory attribute) (nglview.MDAnalysisTrajectory attribute) (nglview.MDTrajTrajectory attribute) (nglview.ParmEdTrajectory attribute) (nglview.PyTrajTrajectory attribute) (nglview.SimpletrajTrajectory attribute) (nglview.adaptor.MDAnalysisTrajectory attribute) (nglview.adaptor.MDTrajTrajectory attribute) (nglview.adaptor.ParmEdTrajectory attribute) (nglview.adaptor.PyTrajTrajectory attribute) (nglview.adaptor.SimpletrajTrajectory attribute) nglview (module)

nglview.adaptor (module) nglview.datafiles (module) nglview.layout (module) nglview.player (module) nglview.scripts (module) nglview.scripts.app (module) nglview.scripts.cmd_example (module) nglview.scripts.nglview (module) nglview.shape (module) nglview.static (module) nglview.theme (module) nglview.theme.theme (module) nglview.widget (module) NGLViewApp (class in nglview.scripts.app) NGLWidget (class in nglview), [1] (class in nglview.widget)

O

oceans16() (in module nglview.theme.theme) on_camera_changed (nglview.player.TrajectoryPlayer attribute) on_frame_changed (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) on_loaded (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) on_spin_changed (nglview.player.TrajectoryPlayer attribute)

on_spin_speed_changed (nglview.player.TrajectoryPlayer attribute) on_spin_x_changed (nglview.player.TrajectoryPlayer attribute) on_spin_y_changed (nglview.player.TrajectoryPlayer attribute) on_spin_z_changed (nglview.player.TrajectoryPlayer attribute) on_update_dragged_file (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) orientation (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute)

P

parameters (nglview.NGLWidget attribute), [1] (nglview.player.TrajectoryPlayer attribute) (nglview.widget.NGLWidget attribute) ParmEdTrajectory (class in nglview) (class in nglview.adaptor)

PdbIdStructure (class in nglview) (class in nglview.adaptor) picked (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) PyTrajTrajectory (class in nglview) (class in nglview.adaptor)

R

RdkitStructure (class in nglview) (class in nglview.adaptor) register_backend (class in nglview) (class in nglview.adaptor) remove_component() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method)

render_image() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) representations (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) reset() (in module nglview.theme.theme)

S

scripts (module) selector (nglview.NGLWidget attribute), [1] (nglview.widget.NGLWidget attribute) set_representations() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) Shape (class in nglview.shape) show() (nglview.NGLWidget method), [1] (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method) show_ase() (in module nglview) show_htmd() (in module nglview) show_mdanalysis() (in module nglview) show_mdtraj() (in module nglview) show_only() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method)

show_parmed() (in module nglview) show_pdbid() (in module nglview) show_pytraj() (in module nglview) show_rdkit() (in module nglview) show_simpletraj() (in module nglview) show_structure_file() (in module nglview) show_text() (in module nglview) show_url() (in module nglview) SimpletrajTrajectory (class in nglview) (class in nglview.adaptor) smooth() (nglview.player.TrajectoryPlayer method) spin (nglview.player.TrajectoryPlayer attribute) step (nglview.player.TrajectoryPlayer attribute) sync_frame (nglview.player.TrajectoryPlayer attribute) sync_view() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method)

T

TextStructure (class in nglview) (class in nglview.adaptor)

TrajectoryPlayer (class in nglview.player)

U

update_delay (nglview.player.TrajectoryPlayer attribute) update_parameters (nglview.player.TrajectoryPlayer attribute)

update_representation() (nglview.NGLWidget method), [1] (nglview.widget.NGLWidget method) update_sync_frame (nglview.player.TrajectoryPlayer attribute)

W

widget_accordion_repr_parameters (nglview.player.TrajectoryPlayer attribute) widget_component_dropdown (nglview.player.TrajectoryPlayer attribute) widget_component_slider (nglview.player.TrajectoryPlayer attribute) widget_drag (nglview.player.TrajectoryPlayer attribute) widget_export_image (nglview.player.TrajectoryPlayer attribute) widget_extra (nglview.player.TrajectoryPlayer attribute) widget_general (nglview.player.TrajectoryPlayer attribute) widget_help (nglview.player.TrajectoryPlayer attribute) widget_picked (nglview.player.TrajectoryPlayer attribute) widget_preference (nglview.player.TrajectoryPlayer attribute)

widget_quick_repr (nglview.player.TrajectoryPlayer attribute) widget_repr (nglview.player.TrajectoryPlayer attribute) widget_repr_add (nglview.player.TrajectoryPlayer attribute) widget_repr_choices (nglview.player.TrajectoryPlayer attribute) widget_repr_control_buttons (nglview.player.TrajectoryPlayer attribute) widget_repr_name (nglview.player.TrajectoryPlayer attribute) widget_repr_parameters (nglview.player.TrajectoryPlayer attribute) widget_repr_parameters_dialog (nglview.player.TrajectoryPlayer attribute) widget_repr_slider (nglview.player.TrajectoryPlayer attribute) widget_tab (nglview.player.TrajectoryPlayer attribute) widget_theme (nglview.player.TrajectoryPlayer attribute)