Index

A

add() (nglview.shape.Shape method) add_buffer() (nglview.shape.Shape method) add_component() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) add_pdbid() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) add_representation() (nglview.NGLWidget method) (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method)

add_structure() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) add_trajectory() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) ASEStructure (class in nglview) (class in nglview.adaptor) ASETrajectory (class in nglview) (class in nglview.adaptor)

B

background (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute)

BiopythonStructure (class in nglview) (class in nglview.adaptor) btn_center (nglview.player.TrajectoryPlayer attribute)

C

camera (nglview.player.TrajectoryPlayer attribute) camera() (nglview.NGLWidget property) (nglview.widget.NGLWidget property) center() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) center_view() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) clean_empty_output_area() (in module nglview.utils.js_utils)

clean_error_output() (in module nglview.utils.js_utils) clear() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) clear_representations() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) color_by() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) ComponentViewer (class in nglview.widget)

D

delay (nglview.player.TrajectoryPlayer attribute) demo() (in module nglview) display() (nglview.NGLWidget method) (nglview.widget.NGLWidget method)

download_image() (nglview.NGLWidget method) (nglview.widget.NGLWidget method)

E

execute() (in module nglview.utils.js_utils)

F

FileStructure (class in nglview) (class in nglview.adaptor) frame (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute)

frame() (nglview.player.TrajectoryPlayer property) from_files() (nglview.adaptor.SchrodingerTrajectory class method) (nglview.SchrodingerTrajectory class method)

G

get_coordinates() (nglview.adaptor.ASETrajectory method) (nglview.adaptor.HTMDTrajectory method) (nglview.adaptor.MDAnalysisTrajectory method) (nglview.adaptor.MDTrajTrajectory method) (nglview.adaptor.ParmEdTrajectory method) (nglview.adaptor.ProdyTrajectory method) (nglview.adaptor.PyTrajTrajectory method) (nglview.adaptor.SchrodingerTrajectory method) (nglview.adaptor.SimpletrajTrajectory method) (nglview.ASETrajectory method) (nglview.HTMDTrajectory method) (nglview.MDAnalysisTrajectory method) (nglview.MDTrajTrajectory method) (nglview.ParmEdTrajectory method) (nglview.ProdyTrajectory method) (nglview.PyTrajTrajectory method) (nglview.SchrodingerTrajectory method) (nglview.SimpletrajTrajectory method) get_port() (nglview.scripts.app.NGLViewApp method) get_remote_port() (in module nglview.scripts.nglview) get_structure_string() (nglview.adaptor.ASEStructure method) (nglview.adaptor.ASETrajectory method) (nglview.adaptor.BiopythonStructure method) (nglview.adaptor.FileStructure method) (nglview.adaptor.HTMDTrajectory method) (nglview.adaptor.IODataStructure method) (nglview.adaptor.IOTBXStructure method) (nglview.adaptor.MDAnalysisTrajectory method) (nglview.adaptor.MDTrajTrajectory method) (nglview.adaptor.OpenbabelStructure method) (nglview.adaptor.PdbIdStructure method) (nglview.adaptor.ProdyStructure method) (nglview.adaptor.PyTrajTrajectory method) (nglview.adaptor.QCElementalStructure method) (nglview.adaptor.RdkitStructure method) (nglview.adaptor.RosettaStructure method) (nglview.adaptor.SchrodingerStructure method) (nglview.adaptor.SchrodingerTrajectory method) (nglview.adaptor.SimpletrajTrajectory method) (nglview.adaptor.TextStructure method) (nglview.ASEStructure method) (nglview.ASETrajectory method) (nglview.BiopythonStructure method) (nglview.FileStructure method) (nglview.HTMDTrajectory method) (nglview.IODataStructure method) (nglview.IOTBXStructure method) (nglview.MDAnalysisTrajectory method) (nglview.MDTrajTrajectory method) (nglview.OpenbabelStructure method) (nglview.PdbIdStructure method) (nglview.ProdyStructure method) (nglview.PyTrajTrajectory method) (nglview.QCElementalStructure method) (nglview.RdkitStructure method) (nglview.RosettaStructure method) (nglview.SchrodingerStructure method) (nglview.SchrodingerTrajectory method) (nglview.SimpletrajTrajectory method) (nglview.TextStructure method)

get_widget_by_name() (in module nglview.utils.widget_utils) gui_style (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute)

H

handle_resize() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) hide() (nglview.NGLWidget method) (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method)

hide_toolbar() (in module nglview.utils.js_utils) HTMDTrajectory (class in nglview) (class in nglview.adaptor)

I

id() (nglview.widget.ComponentViewer property) init_funcs() (in module nglview.utils.js_utils) interpolate (nglview.player.TrajectoryPlayer attribute) interupt() (nglview.contrib.movie.MovieMaker method)

IODataStructure (class in nglview) (class in nglview.adaptor) IOTBXStructure (class in nglview) (class in nglview.adaptor) iparams (nglview.player.TrajectoryPlayer attribute)

L

launch_qtconsole() (in module nglview.utils.js_utils)

loaded (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute)

M

main() (in module nglview.scripts.nglview) make() (nglview.contrib.movie.MovieMaker method) make_form_item_layout() (in module nglview.layout) make_old_impl() (nglview.contrib.movie.MovieMaker method) max_frame (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute) max_frame() (nglview.player.TrajectoryPlayer property) MDAnalysisTrajectory (class in nglview) (class in nglview.adaptor) MDTrajTrajectory (class in nglview) (class in nglview.adaptor) module nglview nglview.adaptor nglview.contrib.movie nglview.datafiles nglview.layout nglview.player nglview.scripts nglview.scripts.app nglview.scripts.cmd_example nglview.scripts.nglview nglview.shape nglview.static nglview.theme nglview.theme.theme nglview.utils.js_utils nglview.utils.widget_utils nglview.widget

MovieMaker (class in nglview.contrib.movie)

N

n_components (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute) n_frames() (nglview.adaptor.ASETrajectory property) (nglview.adaptor.HTMDTrajectory property) (nglview.adaptor.MDAnalysisTrajectory property) (nglview.adaptor.MDTrajTrajectory property) (nglview.adaptor.ParmEdTrajectory property) (nglview.adaptor.ProdyTrajectory property) (nglview.adaptor.PyTrajTrajectory property) (nglview.adaptor.SchrodingerTrajectory property) (nglview.adaptor.SimpletrajTrajectory property) (nglview.ASETrajectory property) (nglview.HTMDTrajectory property) (nglview.MDAnalysisTrajectory property) (nglview.MDTrajTrajectory property) (nglview.ParmEdTrajectory property) (nglview.ProdyTrajectory property) (nglview.PyTrajTrajectory property) (nglview.SchrodingerTrajectory property) (nglview.SimpletrajTrajectory property) ngl_demo() (in module nglview.utils.js_utils) nglview module nglview.adaptor module nglview.contrib.movie module nglview.datafiles module

nglview.layout module nglview.player module nglview.scripts module nglview.scripts.app module nglview.scripts.cmd_example module nglview.scripts.nglview module nglview.shape module nglview.static module nglview.theme module nglview.theme.theme module nglview.utils.js_utils module nglview.utils.widget_utils module nglview.widget module NGLViewApp (class in nglview.scripts.app) NGLWidget (class in nglview) (class in nglview.widget)

O

on_camera_changed (nglview.player.TrajectoryPlayer attribute) on_loaded (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute)

OpenbabelStructure (class in nglview) (class in nglview.adaptor)

P

parameters (nglview.player.TrajectoryPlayer attribute) parameters() (nglview.NGLWidget property) (nglview.widget.NGLWidget property) ParmEdTrajectory (class in nglview) (class in nglview.adaptor) PdbIdStructure (class in nglview) (class in nglview.adaptor) picked (nglview.NGLWidget attribute) (nglview.widget.NGLWidget attribute)

ProdyStructure (class in nglview) (class in nglview.adaptor) ProdyTrajectory (class in nglview) (class in nglview.adaptor) Psi4Structure (class in nglview) (class in nglview.adaptor) PyTrajTrajectory (class in nglview) (class in nglview.adaptor)

Q

QCElementalStructure (class in nglview) (class in nglview.adaptor)

R

RdkitStructure (class in nglview) (class in nglview.adaptor) register_backend (class in nglview) (class in nglview.adaptor) remove_component() (nglview.NGLWidget method) (nglview.widget.NGLWidget method)

render_image() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) representations() (nglview.NGLWidget property) (nglview.widget.NGLWidget property) RosettaStructure (class in nglview) (class in nglview.adaptor) run() (in module nglview.utils.js_utils)

S

SchrodingerStructure (class in nglview) (class in nglview.adaptor) SchrodingerTrajectory (class in nglview) (class in nglview.adaptor) set_coordinates() (nglview.NGLWidget method) (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method) set_position() (nglview.widget.ComponentViewer method) set_representations() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) set_rotation() (nglview.widget.ComponentViewer method) set_scale() (nglview.widget.ComponentViewer method) Shape (class in nglview.shape) show() (nglview.NGLWidget method) (nglview.widget.ComponentViewer method) (nglview.widget.NGLWidget method) show_ase() (in module nglview) show_asetraj() (in module nglview) show_biopython() (in module nglview) show_file() (in module nglview) show_htmd() (in module nglview) show_iodata() (in module nglview) show_iotbx() (in module nglview) show_mdanalysis() (in module nglview)

show_mdtraj() (in module nglview) show_only() (nglview.NGLWidget method) (nglview.widget.NGLWidget method) show_openbabel() (in module nglview) show_parmed() (in module nglview) show_pdbid() (in module nglview) show_prody() (in module nglview) show_psi4() (in module nglview) show_pymatgen() (in module nglview) show_pytraj() (in module nglview) show_qcelemental() (in module nglview) show_rdkit() (in module nglview) show_rosetta() (in module nglview) show_schrodinger() (in module nglview) show_simpletraj() (in module nglview) show_structure_file() (in module nglview) show_text() (in module nglview) show_toolbar() (in module nglview.utils.js_utils) show_url() (in module nglview) SimpletrajTrajectory (class in nglview) (class in nglview.adaptor) sleep() (nglview.contrib.movie.MovieMaker method) smooth() (nglview.player.TrajectoryPlayer method) step (nglview.player.TrajectoryPlayer attribute)

T

TextStructure (class in nglview) (class in nglview.adaptor)

TrajectoryPlayer (class in nglview.player)

U

update_parameters (nglview.player.TrajectoryPlayer attribute)

update_representation() (nglview.NGLWidget method) (nglview.widget.NGLWidget method)

W

wait() (in module nglview.utils.widget_utils) widget_accordion_repr_parameters (nglview.player.TrajectoryPlayer attribute) widget_background (nglview.player.TrajectoryPlayer attribute) widget_camera (nglview.player.TrajectoryPlayer attribute) widget_component_dropdown (nglview.player.TrajectoryPlayer attribute) widget_component_slider (nglview.player.TrajectoryPlayer attribute) widget_export_image (nglview.player.TrajectoryPlayer attribute) widget_extra (nglview.player.TrajectoryPlayer attribute) widget_general (nglview.player.TrajectoryPlayer attribute) widget_help (nglview.player.TrajectoryPlayer attribute) widget_picked (nglview.player.TrajectoryPlayer attribute) widget_player (nglview.player.TrajectoryPlayer attribute)

widget_preference (nglview.player.TrajectoryPlayer attribute) widget_quick_repr (nglview.player.TrajectoryPlayer attribute) widget_repr (nglview.player.TrajectoryPlayer attribute) widget_repr_add (nglview.player.TrajectoryPlayer attribute) widget_repr_choices (nglview.player.TrajectoryPlayer attribute) widget_repr_control_buttons (nglview.player.TrajectoryPlayer attribute) widget_repr_name (nglview.player.TrajectoryPlayer attribute) widget_repr_parameters (nglview.player.TrajectoryPlayer attribute) widget_repr_parameters_dialog (nglview.player.TrajectoryPlayer attribute) widget_repr_slider (nglview.player.TrajectoryPlayer attribute) widget_tab (nglview.player.TrajectoryPlayer attribute) write_html() (in module nglview)