import Polymer from 'ngl/src/proxy/polymer.js'

public class | source

Polymer

Constructor Summary

Public Constructor
public	constructor(structure: Structure, residueIndexStart: Integer, residueIndexEnd: Integer)

Member Summary

Public Members
public	atomStore: AtomStore
public get	chainIndex
public	chainStore: ChainStore
public get	chainname: String
public	isCyclic
public	isNextConnected
public	isNextNextConnected
public	isPrevConnected
public get	modelIndex
public	residueCount: Integer
public	residueIndexEnd: Integer
public	residueIndexStart: Integer
public	residueStore: ResidueStore
public	structure: Structure

Private Members
private	__residueProxy

Method Summary

Public Methods
public	eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined Atom iterator
public	eachAtomN()
public	eachAtomN2()
public	eachResidue(callback: function(residue: ResidueProxy)): undefined Residue iterator
public	getAtomIndexByType()
public	getBackboneType()
public	getMoleculeType()
public	isCg(): Boolean If atom is part of a coarse-grain group
public	isNucleic(): Boolean If atom is part of a nucleic molecule
public	isProtein(): Boolean If first residue is from aprotein
public	qualifiedName()

Public Constructors

public constructor(structure: Structure, residueIndexStart: Integer, residueIndexEnd: Integer) source

Params:

Name	Type	Attribute	Description
structure	Structure		the structure
residueIndexStart	Integer		the index of the first residue
residueIndexEnd	Integer		the index of the last residue

Public Members

public atomStore: AtomStore source

public get chainIndex source

public chainStore: ChainStore source

public get chainname: String source

public isCyclic source

public isNextConnected source

public isNextNextConnected source

public isPrevConnected source

public get modelIndex source

public residueCount: Integer source

public residueIndexEnd: Integer source

public residueIndexStart: Integer source

public residueStore: ResidueStore source

public structure: Structure source

Private Members

private __residueProxy source

Public Methods

public eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined source

Atom iterator

Params:

Name	Type	Attribute	Description
callback	function(atom: AtomProxy)		the callback
selection	Selection	optional	the selection

Return:

undefined

public eachAtomN() source

public eachAtomN2() source

public eachResidue(callback: function(residue: ResidueProxy)): undefined source

Residue iterator

Params:

Name	Type	Attribute	Description
callback	function(residue: ResidueProxy)		the callback

Return:

undefined

public getAtomIndexByType() source

public getBackboneType() source

public getMoleculeType() source

public isCg(): Boolean source

If atom is part of a coarse-grain group

Return:

Boolean

flag

public isNucleic(): Boolean source

If atom is part of a nucleic molecule

Return:

Boolean

flag

public isProtein(): Boolean source

If first residue is from aprotein

Return:

Boolean

flag

Polymer

Constructor Summary

Member Summary

Method Summary

Public Constructors

public constructor(structure: Structure, residueIndexStart: Integer, residueIndexEnd: Integer) source

Params:

Public Members

public atomStore: AtomStore source

public get chainIndex source

public chainStore: ChainStore source

public get chainname: String source

public isCyclic source

public isNextConnected source

public isNextNextConnected source

public isPrevConnected source

public get modelIndex source

public residueCount: Integer source

public residueIndexEnd: Integer source

public residueIndexStart: Integer source

public residueStore: ResidueStore source

public structure: Structure source

Private Members

private __residueProxy source

Public Methods

public eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined source

Params:

Return:

public eachAtomN() source

public eachAtomN2() source

public eachResidue(callback: function(residue: ResidueProxy)): undefined source

Params:

Return:

public getAtomIndexByType() source

public getBackboneType() source

public getMoleculeType() source

public isCg(): Boolean source

Return:

public isNucleic(): Boolean source

Return:

public isProtein(): Boolean source

Return:

public qualifiedName() source