import ChainProxy from 'ngl/src/proxy/chain-proxy.js'

public class | source

ChainProxy

Chain proxy

Constructor Summary

Public Constructor
public	constructor(structure: Structure, index: Integer)

Member Summary

Public Members
public get	atomCount: Integer Atom count
public get	atomEnd
public get	atomOffset
public	chainStore: ChainStore
public set	chainid
public get	chainid: String Chain id
public set	chainname
public get	chainname: String Chain name
public get	entity: Entity Entity
public get	entityIndex
public set	entityIndex
public	index: Integer
public get	model: ModelProxy Model
public get	modelIndex
public set	modelIndex
public set	residueCount
public get	residueCount: Integer Residue count
public get	residueEnd
public get	residueOffset
public set	residueOffset
public	residueStore: ResidueStore
public	structure: Structure

Method Summary

Public Methods
public	clone(): ChainProxy Clone object
public	eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined Atom iterator
public	eachPolymer(callback: function(polymer: Polymer), selection: Selection): undefined Polymer iterator
public	eachResidue(callback: function(residue: ResidueProxy), selection: Selection): undefined Residue iterator
public	eachResidueN(n: Integer, callback: function(residueList: ResidueProxy[])): undefined Multi-residue iterator
public	qualifiedName()
public	toObject()

Public Constructors

public constructor(structure: Structure, index: Integer) source

Params:

Name	Type	Attribute	Description
structure	Structure		the structure
index	Integer		the index

Public Members

public get atomCount: Integer source

Atom count

public get atomEnd source

public get atomOffset source

public chainStore: ChainStore source

public set chainid source

public get chainid: String source

Chain id

public set chainname source

public get chainname: String source

Chain name

public get entity: Entity source

Entity

public get entityIndex source

public set entityIndex source

public index: Integer source

public get model: ModelProxy source

Model

public get modelIndex source

public set modelIndex source

public set residueCount source

public get residueCount: Integer source

Residue count

public get residueEnd source

public get residueOffset source

public set residueOffset source

public residueStore: ResidueStore source

public structure: Structure source

Public Methods

public clone(): ChainProxy source

Clone object

Return:

ChainProxy

cloned chain

public eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined source

Atom iterator

Params:

Name	Type	Attribute	Description
callback	function(atom: AtomProxy)		the callback
selection	Selection	optional	the selection

Return:

undefined

public eachPolymer(callback: function(polymer: Polymer), selection: Selection): undefined source

Polymer iterator

Params:

Name	Type	Attribute	Description
callback	function(polymer: Polymer)		the callback
selection	Selection	optional	the selection

Return:

undefined

public eachResidue(callback: function(residue: ResidueProxy), selection: Selection): undefined source

Residue iterator

Params:

Name	Type	Attribute	Description
callback	function(residue: ResidueProxy)		the callback
selection	Selection	optional	the selection

Return:

undefined

public eachResidueN(n: Integer, callback: function(residueList: ResidueProxy[])): undefined source

Multi-residue iterator

Params:

Name	Type	Attribute	Description
n	Integer		window size
callback	function(residueList: ResidueProxy[])		the callback

Return:

undefined

ChainProxy

Constructor Summary

Member Summary

Method Summary

Public Constructors

public constructor(structure: Structure, index: Integer) source

Params:

Public Members

public get atomCount: Integer source

public get atomEnd source

public get atomOffset source

public chainStore: ChainStore source

public set chainid source

public get chainid: String source

public set chainname source

public get chainname: String source

public get entity: Entity source

public get entityIndex source

public set entityIndex source

public index: Integer source

public get model: ModelProxy source

public get modelIndex source

public set modelIndex source

public set residueCount source

public get residueCount: Integer source

public get residueEnd source

public get residueOffset source

public set residueOffset source

public residueStore: ResidueStore source

public structure: Structure source

Public Methods

public clone(): ChainProxy source

Return:

public eachAtom(callback: function(atom: AtomProxy), selection: Selection): undefined source

Params:

Return:

public eachPolymer(callback: function(polymer: Polymer), selection: Selection): undefined source

Params:

Return:

public eachResidue(callback: function(residue: ResidueProxy), selection: Selection): undefined source

Params:

Return:

public eachResidueN(n: Integer, callback: function(residueList: ResidueProxy[])): undefined source

Params:

Return:

public qualifiedName() source

public toObject() source